Description Usage Arguments Value Author(s) References Examples
Convert HITChip data into phyloseq format.
1 | hitchip2physeq(otu, meta = NULL, taxonomy = NULL, detection.limit = 10^1.8)
|
otu |
Sample x OTU absolute HITChip signal |
meta |
Sample x features metadata data.frame |
taxonomy |
OTU x Taxonomy data.frame (HITChip taxonomy used by default) |
detection.limit |
HITChip signal detection limit (absence / presence) |
phyloseq object
Contact: Leo Lahti microbiome-admin@googlegroups.com
Utilizes the phyloseq package, see citation("phyloseq"). For this function, see citation('microbiome').
1 2 3 4 5 6 7 8 | ## Not run:
library(microbiome)
data(peerj32)
otu <- peerj32$microbes
meta <- peerj32$meta
pseq <- hitchip2physeq(otu, meta)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.