hitchip2physeq: HITChip to phyloseq

In microbiome/HITChipDB: HITChipDB

Description

Convert HITChip data into phyloseq format.

Usage

hitchip2physeq(otu, meta = NULL, taxonomy = NULL, detection.limit = 10^1.8)

Arguments

otu	Sample x OTU absolute HITChip signal
meta	Sample x features metadata data.frame
taxonomy	OTU x Taxonomy data.frame (HITChip taxonomy used by default)
detection.limit	HITChip signal detection limit (absence / presence)

Value

phyloseq object

Author(s)

Contact: Leo Lahti [e-mail]

References

Utilizes the phyloseq package, see citation("phyloseq"). For this function, see citation('microbiome').

Examples

 ## Not run: 
  library(microbiome)
  data(peerj32)
  otu <- peerj32$microbes
  meta <- peerj32$meta
  pseq <- hitchip2physeq(otu, meta)

## End(Not run)

microbiome/HITChipDB documentation built on June 7, 2020, 8:25 a.m.