relative.abundance: Relative abundance
In microbiome/HITChipDB: HITChipDB
Description
Usage
Arguments
Value
Author(s)
References
Examples
View source: R/relative.abundance.R
Description
Estimate relative abundance for each phylotype in each sample
with a given threshold.
Usage
1
relative.abundance(dat, det.th = 0)
Arguments
dat
data matrix (phylotypes x samples) in original (non-log) scale
det.th
detection threshold.
Value
Vector containing relative proportions for each phylotype in
each sample
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1
2
data(peerj32)
relab <- relative.abundance(10^t(peerj32$microbes), det.th = 0)
microbiome/HITChipDB documentation built on June 7, 2020, 8:25 a.m.
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Description Usage Arguments Value Author(s) References Examples
View source: R/relative.abundance.R
Description
Estimate relative abundance for each phylotype in each sample with a given threshold.
Usage
1 | relative.abundance(dat, det.th = 0)
|
Arguments
dat |
data matrix (phylotypes x samples) in original (non-log) scale |
det.th |
detection threshold. |
Value
Vector containing relative proportions for each phylotype in each sample
Author(s)
Contact: Leo Lahti microbiome-admin@googlegroups.com
References
See citation('microbiome')
Examples
1 2 | data(peerj32)
relab <- relative.abundance(10^t(peerj32$microbes), det.th = 0)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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