fetch.sample.info: fetch.sample.info

In microbiome/HITChipDB: HITChipDB

Description

Description: Fetch sample information from HITChip atlas

Usage

fetch.sample.info(
  allowed.projects,
  chiptype = NULL,
  dbuser,
  dbpwd,
  dbname,
  selected.samples = NULL,
  host = NULL,
  port = NULL
)

Arguments

allowed.projects	list projects for which to fetch the data
chiptype	chiptype (eg. new.chip)
dbuser	MySQL user
dbpwd	MySQL password
dbname	MySqL database name
selected.samples	Sample to investigate. By default all.
host	host; needed with FTP connections
port	port; needed with FTP connections @return project.info data.frame

Details

Arguments:

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation("microbiome")

Examples

# info <- fetch.sample.info(allowed.projects, dbuser, dbpwd, 
         # dbname, selected.samples = NULL, host = NULL, port = NULL)

microbiome/HITChipDB documentation built on June 7, 2020, 8:25 a.m.