add.heatmap: add.heatmap

In microbiome/HITChipDB: HITChipDB

Description

Add oligprofile heatmap into output directory.

Usage

add.heatmap(
  dat,
  output.dir,
  output.file = NULL,
  taxonomy,
  ppcm = 150,
  hclust.method = "complete",
  palette = "white/black",
  level = "L1",
  metric = "pearson",
  figureratio = 10,
  fontsize = 40,
  tree.display = TRUE
)

Arguments

dat	oligoprofile data in original (non-log) domain
output.dir	output data directory
output.file	output file name
taxonomy	oligo-phylotype mappings
ppcm	figure size
hclust.method	hierarchical clustering method
palette	color palette ("white/black" / "white/blue" / "black/yellow/white")
level	taxonomic level to show
metric	clustering metric
figureratio	figure ratio
fontsize	font size
tree.display	tree.display

Value

Plotting parameters

Author(s)

Contact: Leo Lahti [e-mail]

References

See citation("microbiome")

Examples

# data(peerj32); hc <- add.heatmap(peerj32$microbes[, 1:4])

microbiome/HITChipDB documentation built on June 7, 2020, 8:25 a.m.