Description Usage Arguments Author(s) References
Arguments:
1 2 3 4 5 6 7 | summarize.sum(
taxonomy,
level,
probedata,
verbose = TRUE,
downweight.ambiguous.probes = TRUE
)
|
taxonomy |
oligo - phylotype matching data.frame |
level |
taxonomic level for the summarization. |
probedata |
preprocessed probes x samples data matrix in absolute domain |
verbose |
print intermediate messages |
downweight.ambiguous.probes |
Downweight probes with multiple targets Returns: @return List with two elements: abundance.table (summarized data matrix in absolute scale) and probe.parameters used in the calculations |
Contact: Leo Lahti microbiome-admin@googlegroups.com
See citation("microbiome")
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