adiv: Alpha Diversity Calculation
In microresearcher/MicroVis: Microbiome Analysis and Visualization
View source: R/analysisAlphaDiv.R
adiv R Documentation
Alpha Diversity Calculation
Description
Alpha Diversity Calculation
Usage
adiv(dataset = NULL, method = "chao1", rooted = F)
Arguments
dataset
MicroVis dataset. Defaults to active dataset
method
Method for alpha diversity calculation. One of either "chao1",
"shannon", "simpson", "invsimpson", or "pd". Defaults to "chao1"
rooted
(Optional) If method is set to "pd", calculate rooted or unrooted
Faith's phylogenetic diversity index? Defaults to FALSE
Value
Table with the alpha diversity index for each sample
microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.
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View source: R/analysisAlphaDiv.R
| adiv | R Documentation |
Alpha Diversity Calculation
Description
Alpha Diversity Calculation
Usage
adiv(dataset = NULL, method = "chao1", rooted = F)
Arguments
dataset |
MicroVis dataset. Defaults to active dataset |
method |
Method for alpha diversity calculation. One of either "chao1", "shannon", "simpson", "invsimpson", or "pd". Defaults to "chao1" |
rooted |
(Optional) If method is set to "pd", calculate rooted or unrooted Faith's phylogenetic diversity index? Defaults to FALSE |
Value
Table with the alpha diversity index for each sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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