excludeFeatures: Exclude specific features at a specified taxonomic rank. Only...

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Exclude specific features at a specified taxonomic rank. Only for taxonomic datasets with multiple taxonomic ranks.

Description

Exclude specific features at a specified taxonomic rank. Only for taxonomic datasets with multiple taxonomic ranks.

Usage

excludeFeatures(
  dataset = NULL,
  features,
  reset = F,
  rank = NULL,
  temp = F,
  silent = F
)

Arguments

dataset	MicroVis dataset. Defaults to the active dataset
features	Vector of features (at any rank) to select
reset	Reset the feature remover to include all features prior to processing
rank	(Optional) Specify a rank from which to select features. Searches through all ranks by default
temp	This parameter has no use in this function and can be removed
silent	Argument that is ultimately passed onto runSampleFilter(), runNormalization(), and runFeatureFilter(), telling them not to output any messages.

Value

Dataset with list of excluded features that is passed to runFeatureFilter

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.