calcUniVar: Core Univariate Analysis Function

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Core Univariate Analysis Function

Description

Core Univariate Analysis Function

Usage

calcUniVar(
  data,
  factor,
  stratifiers = NULL,
  features,
  param = F,
  pairwise_comparisons = NULL
)

Arguments

data	Data table containing metadata and count values with samples as rows and metadata factors or features as columns
factor	Factor along which to form groups from the samples and perform the statistical analysis
stratifiers	(Optional) One or two factors to stratify the groups by
features	List of features to analyze. Defaults to all
param	Run parametrized or nonparametrized univariate analysis? Default is FALSE
pairwise_comparisons	For 3 or more groups, list of vectors of pairwise comparisons to conduct. Defaults to all possible pairwise comparisons

Value

List containing a table for overall statistics results and the features that were skipped due to having the same mean. For analyses with 3 or more groups, also contains a second table with the pairwise statistics results

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.