ftcor: Compute feature correlation matrices for each group and all...

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Compute feature correlation matrices for each group and all groups together

Description

Compute feature correlation matrices for each group and all groups together

Usage

ftcor(
  dataset1 = NULL,
  dataset2 = NULL,
  method = c("pearson", "kendall", "spearman"),
  factor = NULL,
  features1 = NULL,
  features2 = NULL
)

Arguments

dataset1	MicroVis dataset. Defaults to the active dataset
dataset2	(Optional) MicroVis dataset with features to correlate with the 'dataset1'
method	Correlation method. One of either "pearson", "spearman", or "kendall". Defaults to "spearman"
factor	Factor to group samples by
features1	(Optional) Specific features to consider from first dataset. If only one dataset is being used, then these features will be correlated with features of the same dataset
features2	(Optional) Specific features to consider from second dataset. If no second dataset is provided, then 'features1' will be correlated with 'features2' from 'dataset1'

Value

List of correlation matrices for each group with additional matrices containing p-values and adjusted p-values

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.