agglomTaxa: Agglomerate taxa into parent taxa

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Agglomerate taxa into parent taxa

Description

Agglomerate taxa into parent taxa

Usage

agglomTaxa(taxa_data, abundance_table, from_rank, to_rank)

Arguments

taxa_data	Taxonomy data with abundance tables and taxa names table
abundance_table	Abundance table
from_rank	Starting rank (must be lower than "to_rank")
to_rank	Destination rank (must be higher than "from_rank")

Value

List of parent taxa at the "to_rank" rank for each taxon in "abundance_table"

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.