filterLowRelAbun: Filter Low Relative Abundance Features

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Filter Low Relative Abundance Features

Description

Filter Low Relative Abundance Features

Usage

filterLowRelAbun(dataset = NULL, top = NULL, min_relabun = NULL, silent = F)

Arguments

dataset	MicroVis dataset (mvdata object)
top	(Optional) Top n number of features to be kept based relative abundance. Specifying a value for this will override the min_relabun value.
min_relabun	(Optional) (Default) Relative abundance threshold. Features with prevalence lower than this threshold will be filtered out.
silent	Argument that is ultimately passed onto runSampleFilter(), runNormalization(), and runFeatureFilter(), telling them not to output any messages.

Value

MicroVis dataset (mvdata object) with updated low relative abundance filtering parameters.

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.