getFtStats: Get Feature Statistics for Filtering

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Get Feature Statistics for Filtering

Description

Get Feature Statistics for Filtering

Usage

getFtStats(dataset = NULL, rank = NULL, raw = T, justStats = T, doCLR = F)

Arguments

dataset	MicroVis dataset (mvdata object)
rank	Rank at which to get feature summary stats
raw	Use raw counts to calculate feature statistics. Defaults to TRUE
justStats	Whether to just output the a table of feature statistics instead of all data processing information
doCLR	Calculate average CLR-transformed abundances for each feature

Value

List containing original abundance table, feature names table, and a dataframe of feature statistics used for filtering

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.