bdiv: Beta Diversity Analysis

In microresearcher/MicroVis: Microbiome Analysis and Visualization

Beta Diversity Analysis

Description

Beta Diversity Analysis

Usage

bdiv(
  dataset = NULL,
  factor = NULL,
  stratifier = NULL,
  method = "bray",
  weighted = F
)

Arguments

dataset	MicroVis dataset. Defaults to active dataset
factor	Factor along which to conduct beta-diversity analysis
stratifier	(Optional) A second factor along which to stratify groups
method	Method for dissimilarity calculation. One of either "bray", "euclidean", "jaccard", "unifrac", "manhattan", "canberra", "clark", "kulczynski", "gower", "altGower", "morisita", "horn", "mountford", "raup", "binomial", "chao", "cao", "mahalanobis", "chisq" or "chord"
weighted	(Optional) If method is set to "unifrac", whether to perform weighted or unweighted unifrac. Defaults to FALSE

Value

List of data tables containing various beta-diversity results

microresearcher/MicroVis documentation built on Feb. 8, 2024, 10:59 a.m.