| add_gene_names_deseq2 | add_gene_names_deseq2 |
| add_nmf_modules | add_nmf_modules |
| barcode_plot | barcode_plot |
| calculate_Rsq | calculate_Rsq |
| cellcycle_bar | cellcycle_bar |
| convert_FindMarkers_human | convert_FindMarkers_human |
| convert_FindMarkers_human_MVH | convert_FindMarkers_human_MVH |
| convert_FindMarkers_human_old | convert_FindMarkers_human_old |
| convert_motif_targets_human | convert_motif_targets_human |
| convert_seurat_obj_to_human | convert_seurat_obj_to_human |
| convert_to_fish_scoring | convert_to_fish_scoring |
| convert_to_human_list | convert_to_human_list |
| convert_to_human_list_MVH | convert_to_human_list_MVH |
| go_enrichment_nmf | go_enrichment_nmf |
| go_term_bar | go_term_bar |
| gsea_waterfall_plot | gsea_waterfall_plot |
| invasion_assay_plotting_function | invasion_assay_plotting_function |
| nice_bayesspace_feature_plot | nice_bayesspace_feature_plot |
| nice_dim_plot | nice_dim_plot |
| nice_dim_plot_old | nice_dim_plot_old |
| nice_feature_plot | nice_feature_plot |
| nice_feature_plot_old | nice_feature_plot_old |
| nice_scatter_plot | nice_scatter_plot |
| nice_spatial_dim_plot | nice_spatial_dim_plot |
| nice_spatial_dim_plot_old | nice_spatial_dim_plot_old |
| nice_spatial_feature_plot | nice_spatial_feature_plot |
| nice_spatial_feature_plot_old | nice_spatial_feature_plot_old |
| nice_violin_plot | nice_violin_plot |
| nice_violin_plot_new | nice_violin_plot_new |
| nichenet_wrapper_MVH | nichenet_wrapper_MVH |
| perform_nmf | perform_nmf |
| plot_ccle_data | plot_ccle_data |
| plot_ccle_data_MVH | plot_ccle_data_MVH |
| plot_expression_bulkRNAseq | plot_expression_bulkRNAseq |
| plot_expression_bulkRNAseq_old | plot_expression_bulkRNAseq_old |
| plot_per_cluster | plot_per_cluster |
| plot_spatial_GO_term | plot_spatial_GO_term |
| process_cyquant_plate | process_cyquant_plate |
| run_gsea_gobp | run_gsea_gobp |
| run_gsea_gobp_MVH | run_gsea_gobp_MVH |
| vlnplot_compare_ST_SC | vlnplot_compare_ST_SC |
| wilcox_test_expr | wilcox_test_expr |
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