perform_nmf: perform_nmf
In mvhunter1/mvhfunctions:
perform_nmf R Documentation
perform_nmf
Description
Perform NMF and create gene modules from expression matrix. Slightly modified code from Reuben and Dalia.
Usage
perform_nmf(seurat_obj, rank = 20, cluster_name)
Arguments
seurat_obj
Seurat object.
rank
Rank for NMF, default = 20.
cluster_name
Name of cluster or clusters you want to run NMF on.
Value
NMF results list with matrix, modules, scores and coef.
mvhunter1/mvhfunctions documentation built on May 31, 2024, 3:36 p.m.
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| perform_nmf | R Documentation |
perform_nmf
Description
Perform NMF and create gene modules from expression matrix. Slightly modified code from Reuben and Dalia.
Usage
perform_nmf(seurat_obj, rank = 20, cluster_name)
Arguments
seurat_obj |
Seurat object. |
rank |
Rank for NMF, default = 20. |
cluster_name |
Name of cluster or clusters you want to run NMF on. |
Value
NMF results list with matrix, modules, scores and coef.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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