plot_ccle_data: plot_ccle_data

In mvhunter1/mvhfunctions:

plot_ccle_data

Description

Plot RNA-seq data from CCLE/DepMap repository. ccle_data.R, aka CCLE_expression.csv, and ccle_sample_info.R, aka sample_info.csv, must be loaded first for this function to work. Both files can be downloaded from: https://depmap.org/portal/download/

Usage

plot_ccle_data(ccle_data, genes, cell_line_id = "A375")

Arguments

ccle_data	CCLE log2 RSEM data, with genes as rownames as HGNC ID.
genes	genelist to plot.
cell_line_id	Cell line you want to plot. If A375 or SKMEL28, can just put those names. If anything else, need to put DepMap cell line ID.

Value

bargraph of normalized expression of the given genes.

mvhunter1/mvhfunctions documentation built on May 31, 2024, 3:36 p.m.