go_term_bar: go_term_bar

In mvhunter1/mvhfunctions:

go_term_bar

Description

nice looking bar graph of top GO terms from GSEA by pval or NES.

Usage

go_term_bar(
  gsea_results,
  n_terms = 10,
  metric = "NES",
  fill = T,
  change_labels = F,
  pval_fill = T
)

Arguments

gsea_results	dataframe with GSEA results.
n_terms	number of top GO terms to plot.
metric	must be "NES" or "pval".
fill	if T, will fill bars with gradient colours, if F, will fill bars with grey only.
change_labels	to change pathway names to lowercase and remove "GO:" from the pathway names.
pval_fill	if T, will colour bars based on pval.

Value

bar graph.

mvhunter1/mvhfunctions documentation built on May 31, 2024, 3:36 p.m.