go_enrichment_nmf: go_enrichment_nmf

In mvhunter1/mvhfunctions:

go_enrichment_nmf

Description

Perform GO term enrichment on NMF results using GProfiler. Both GO BP and GO CC enrichment will be run.

Usage

go_enrichment_nmf(
  nmf_results,
  num_genes = 150,
  n_terms_plot = 10,
  species = "fish"
)

Arguments

nmf_results	nmf_results, output from perform_nmf.
num_genes	number of top scoring genes per factor to be used for GO analysis.
n_terms_plot	number of GO terms to be plotted per factor.
species	species to use for GO enrichment. must be one of 'fish', 'zebrafish', or 'human'.

Value

results as list including dataframes with all results, and plots.

mvhunter1/mvhfunctions documentation built on May 31, 2024, 3:36 p.m.