nichenet_wrapper_MVH: nichenet_wrapper_MVH

In mvhunter1/mvhfunctions:

nichenet_wrapper_MVH

Description

perform Nichenet analysis on clusters of interest.

Usage

nichenet_wrapper_MVH(
  seurat_obj,
  sender_ident,
  receiver_ident,
  ligand_target_cutoff = 0.5
)

Arguments

seurat_obj	Seurat object.
sender_ident	Name of cluster you want to be considered as the "sender".
receiver_ident	Name of cluster you want to be considered as the "receiver".
ligand_target_cutoff	Cutoff for ligand-target analysis.

Value

Nichenet results plots.

mvhunter1/mvhfunctions documentation built on May 31, 2024, 3:36 p.m.