nice_violin_plot: nice_violin_plot

In mvhunter1/mvhfunctions:

nice_violin_plot

Description

nicer looking version of the Seurat function VlnPlot.

Usage

nice_violin_plot(
  seurat_obj,
  features,
  group_by = NULL,
  cols = NULL,
  pt.size = 0.3,
  sort = T,
  n_col = NULL,
  plot_hline = T,
  perform_stats = T
)

Arguments

seurat_obj	Seurat object.
features	genes to plot.
group_by	how to group your data, i.e the X axis of the plot - usually a metadata column in the seurat object.
cols	optional: colours to fill the violins with.
pt.size	size of plotted points.
sort	sort X axis in descending order of average expression?
n_col	if multiple features, how many columns to create in the final plot_grid object.
plot_hline	plot a dashed horizontal line at 0?
perform_stats	perform pairwise wilcoxon rank sum test between groups and print P values? *** only works for single plots for now

Value

violin plot.

mvhunter1/mvhfunctions documentation built on May 31, 2024, 3:36 p.m.