plot_ccle_data_MVH: plot_ccle_data_MVH

In mvhunter1/mvhfunctions:

plot_ccle_data_MVH

Description

Plot RNA-seq data from CCLE/DepMap repository. ccle_data.R, aka CCLE_expression.csv, and ccle_sample_info.R, aka sample_info.csv, must be loaded first for this function to work. Both files can be downloaded from: https://depmap.org/portal/download/

Usage

plot_ccle_data_MVH(genes, cell_line_id = "A375")

Arguments

genes	genelist to plot.
cell_line_id	Cell line you want to plot. If A375 or SKMEL28, can just put those names. If anything else, need to put DepMap cell line ID.
ccle_data	CCLE log2 RSEM data, with genes as rownames as HGNC ID.

Value

bargraph of normalized expression of the given genes.

mvhunter1/mvhfunctions documentation built on May 31, 2024, 3:36 p.m.