API for nriddiford/mutationProfiles
Collection of functions to explore SNV data (e.g. Mutect2/Freebayes) parsed by get_tris.pl

Global functions
EnrichmentVolcano	Man page Source code
Volcano	Man page Source code
bpRegionEnrichmentPlot	Man page Source code
bpSim	Man page Source code
chromDist	Man page Source code
cleanTheme	Man page Source code
dist2motif2	Man page Source code
distOverlay2	Man page Source code
featureEnrichment	Man page Source code
featureEnrichmentPlot	Source code
featuresHit	Man page Source code
genTris	Man page Source code
geneEnrichment	Man page Source code
geneHit	Man page Source code
generateData	Man page Source code
genes_of_interest	Source code
getData	Man page Source code
getTriFromFasta	Man page Source code
ggVolcano	Man page Source code
indel_lengths	Man page Source code
indel_seqs	Source code
mergeOverlaps	Man page Source code
mutSigs	Man page Source code
mutSpectrum	Man page Source code
plotMonteCarlo	Man page Source code
plot_indels	Man page Source code
plot_snvs	Man page Source code
plotdistanceOverlay2	Man page Source code
rainfall	Man page Source code
samplesPlot	Man page Source code
setCols	Man page Source code
showSamples	Man page Source code
sigPie	Source code
sigTypes	Man page Source code
simSig2	Source code
snvRegionEnrichment	Man page Source code
snvSim	Man page Source code
snvStats	Man page Source code
snvinGene	Man page Source code
subtractUnmappable	Man page Source code
triFreq	Man page Source code
tssDist	Man page Source code
writeBed	Man page Source code

nriddiford/mutationProfiles documentation built on Nov. 7, 2021, 12:14 a.m.

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