API for nriddiford/mutationProfiles
Collection of functions to explore SNV data (e.g. Mutect2/Freebayes) parsed by get_tris.pl

Global functions
EnrichmentVolcano Man page Source code
Volcano Man page Source code
bpRegionEnrichmentPlot Man page Source code
bpSim Man page Source code
chromDist Man page Source code
cleanTheme Man page Source code
dist2motif2 Man page Source code
distOverlay2 Man page Source code
featureEnrichment Man page Source code
featureEnrichmentPlot Source code
featuresHit Man page Source code
genTris Man page Source code
geneEnrichment Man page Source code
geneHit Man page Source code
generateData Man page Source code
genes_of_interest Source code
getData Man page Source code
getTriFromFasta Man page Source code
ggVolcano Man page Source code
indel_lengths Man page Source code
indel_seqs Source code
mergeOverlaps Man page Source code
mutSigs Man page Source code
mutSpectrum Man page Source code
plotMonteCarlo Man page Source code
plot_indels Man page Source code
plot_snvs Man page Source code
plotdistanceOverlay2 Man page Source code
rainfall Man page Source code
samplesPlot Man page Source code
setCols Man page Source code
showSamples Man page Source code
sigPie Source code
sigTypes Man page Source code
simSig2 Source code
snvRegionEnrichment Man page Source code
snvSim Man page Source code
snvStats Man page Source code
snvinGene Man page Source code
subtractUnmappable Man page Source code
triFreq Man page Source code
tssDist Man page Source code
writeBed Man page Source code
nriddiford/mutationProfiles documentation built on Nov. 8, 2019, 6:22 p.m.