getTriFromFasta: A function to calculate trinucleotide frequences from a...
In nriddiford/mutationProfiles: Collection of functions to explore SNV data (e.g. Mutect2/Freebayes) parsed by get_tris.pl
Description
Usage
Arguments
Value
Description
A function to calculate trinucleotide frequences from a supplied fasta file
Usage
1
getTriFromFasta(fastaFile = "~/Documents/Curie/Data/Genomes/Dmel_v6.12/Dmel_6.12.fasta")
Arguments
fastaFile
A fasta file (genome, exome)
Value
Dataframe of trinucs and freqs (or counts if count=1)
nriddiford/mutationProfiles documentation built on Nov. 7, 2021, 12:14 a.m.
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Description Usage Arguments Value
Description
A function to calculate trinucleotide frequences from a supplied fasta file
Usage
1 | getTriFromFasta(fastaFile = "~/Documents/Curie/Data/Genomes/Dmel_v6.12/Dmel_6.12.fasta")
|
Arguments
fastaFile |
A fasta file (genome, exome) |
Value
Dataframe of trinucs and freqs (or counts if count=1)
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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