nriddiford/mutationProfiles
Collection of functions to explore SNV data (e.g. Mutect2/Freebayes) parsed by get_tris.pl

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snvRegionEnrichment: Calculate the enrichment of SVs in genomic regions

snvRegionEnrichment: Calculate the enrichment of SVs in genomic regions
In nriddiford/mutationProfiles: Collection of functions to explore SNV data (e.g. Mutect2/Freebayes) parsed by get_tris.pl

Description Usage

View source: R/regionEnrichment.R

Description

Calculate the enrichment of SVs in genomic regions

Usage

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snvRegionEnrichment(..., snv_data = NULL,
  bedDir = "/Users/Nick_curie/Desktop/misc_bed/features", keep = NULL,
  slop = 0, plot = TRUE, genome_length = 118274340,
  intersect = FALSE, outDir = NA, parseName = FALSE, minHits = 10)

nriddiford/mutationProfiles documentation built on Nov. 7, 2021, 12:14 a.m.

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