chromDist: chromDist

In nriddiford/mutationProfiles: Collection of functions to explore SNV data (e.g. Mutect2/Freebayes) parsed by get_tris.pl

Description

Plot genome-wide snv distribution

Usage

chromDist(..., snv_data = NULL, notch = FALSE, write = FALSE,
  binsize = 0.1, density = TRUE)

Arguments

snv_data	A dataframe of snvs [Default: NULL]
notch	Filter in/out Notch region [Default: FALSE]
write	Write plot to file 'plots/snv_dist_genome_by.png'? [Default: FALSE]
binsize	Control the density adjustment if density=TRUE, or the binwidth if density=FALSE. For histograms a value of 0.1 corresponds to 1/10th of a Mb [Default:0.1]
density	Plot as density? [Default: TRUE]

nriddiford/mutationProfiles documentation built on Nov. 7, 2021, 12:14 a.m.