triFreq: triFreq
In nriddiford/mutationProfiles: Collection of functions to explore SNV data (e.g. Mutect2/Freebayes) parsed by get_tris.pl
Description
Usage
Arguments
Value
Description
This function counts the number of times each triunucleotide is found in a supplied genome
Usage
1
Arguments
genome
BS.genome file defaults to BSgenome.Dmelanogaster.UCSC.dm6
count
Output total counts instead of frequency if set [Default no]
Value
Dataframe of trinucs and freqs (or counts if count=1)
nriddiford/mutationProfiles documentation built on Nov. 7, 2021, 12:14 a.m.
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Description Usage Arguments Value
Description
This function counts the number of times each triunucleotide is found in a supplied genome
Usage
1 |
Arguments
genome |
BS.genome file defaults to BSgenome.Dmelanogaster.UCSC.dm6 |
count |
Output total counts instead of frequency if set [Default no] |
Value
Dataframe of trinucs and freqs (or counts if count=1)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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