distOverlay2: Calculate the distance from each breakpoint to closest motif...
In nriddiford/mutationProfiles: Collection of functions to explore SNV data (e.g. Mutect2/Freebayes) parsed by get_tris.pl
Description
Calculate the distance from each breakpoint to closest motif
Overlay the same number of random simulated breakpoints
Usage
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distOverlay2(...,
featureDir = "~/Desktop/script_test/svBreaks/rawdata/features/",
from = "bps", lim = 2.5, n = 2, plot = TRUE, keep = NULL,
position = "centre")
nriddiford/mutationProfiles documentation built on Nov. 7, 2021, 12:14 a.m.
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Description
Calculate the distance from each breakpoint to closest motif Overlay the same number of random simulated breakpoints
Usage
1 2 3 4 | distOverlay2(...,
featureDir = "~/Desktop/script_test/svBreaks/rawdata/features/",
from = "bps", lim = 2.5, n = 2, plot = TRUE, keep = NULL,
position = "centre")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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