Description Usage Arguments Details
Plot all snvs found in a given gene. A 'gene_lengths' file must be provided with the following fields (cols 1..6 required) gene length chrom start end tss scaling_factor This can be generated using the script 'script/genomic_features.pl' and a genome .gtf file
1 2 3 |
gene_lengths |
File containing all genes and their lengths (as generated by 'script/genomefeatures.pl') [Default 'data/gene_lengths.txt'] |
gene2plot |
Name of the gene to plot |
Plot all snvs found in a given gene
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