patrickCNMartin/ChIPanalyser: ChIPanalyser: Predicting Transcription Factor Binding Sites
ChIPanalyser is a package to predict and understand TF binding by utilizing a statistical thermodynamic model. The model incorporates 4 main factors thought to drive TF binding: Chromatin State, Binding energy, Number of bound molecules and a scaling factor modulating TF binding affinity. Taken together, ChIPanalyser produces ChIP-like profiles that closely mimic the patterns seens in real ChIP-seq data.
Getting started
Browse package contents
Package details |
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| Author | Patrick C.N.Martin & Nicolae Radu Zabet |
| Bioconductor views | Alignment BiologicalQuestion ChIPSeq ChipOnChip Coverage DataImport PeakDetection SequenceMatching Sequencing Software Transcription WorkflowStep |
| Maintainer | Patrick C.N. Martin <pcnmartin@gmail.com> |
| License | GPL-3 |
| Version | 1.21.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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