clusters_from_shifts | R Documentation |
clusters_from_shifts
take a vector of shifts edges, and gives the
clustering of the tips induced by them, in a "no homoplasy" model (i.e. no
convergence is allowed).
clusters_from_shifts(tree, edges, part.list = enumerate_tips_under_edges(tree))
tree |
phylogenetic tree |
edges |
a vector of edges of the tree, where the shifts are |
part.list |
a list giving the descendant tips of each edge |
By default, this function uses enumerate_tips_under_edges
to compute
the list of tips under each edge.
list of size n+m-1, entry i is the vector of tips bellow edge i.
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