compute_state_filter: List of potential daughter states when parent is in state k.
In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
compute_state_filter R Documentation
List of potential daughter states when parent is in state k.
Description
compute_state_filter compute the admissible daughters states, i.e. states that
realize the minimum cost for the tree parent -> daughter -> subtree(daughter), when
the parent node is in state k.
Usage
compute_state_filter(cost, k)
Arguments
cost
a (ndaughters) x (nclus) matrix of the cost of each state for the
daughters nodes.
k
the parental state considered.
Details
This function is used in functions parsimonyNumber and enumerate_parsimony.
Value
A (ndaughters) x (nclus) binary matrix indicating the admissible
states for the daughters node when parent node is in state k.
pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.
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| compute_state_filter | R Documentation |
List of potential daughter states when parent is in state k.
Description
compute_state_filter compute the admissible daughters states, i.e. states that
realize the minimum cost for the tree parent -> daughter -> subtree(daughter), when
the parent node is in state k.
Usage
compute_state_filter(cost, k)
Arguments
cost |
a (ndaughters) x (nclus) matrix of the cost of each state for the daughters nodes. |
k |
the parental state considered. |
Details
This function is used in functions parsimonyNumber and enumerate_parsimony.
Value
A (ndaughters) x (nclus) binary matrix indicating the admissible states for the daughters node when parent node is in state k.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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