compute_betas_from_shifts: Computation of the optimal values at nodes and tips.
In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
View source: R/shifts_manipulations.R
compute_betas_from_shifts R Documentation
Computation of the optimal values at nodes and tips.
Description
compute_betas_from_shifts computes the optimal values at the nodes and tips of the
tree, given the value at the root and the list of shifts occurring in the tree.
It assumes an OU model.
Usage
compute_betas_from_shifts(phylo, optimal.value, shifts)
Arguments
phylo
a phylogenetic tree, class phylo.
optimal.value
the optimal value at the root of the tree.
shifts
position and values of the shifts .
Details
Note that this is intended to be an internal function, and should not be used.
In general, use node_optimal_values to get optimal values
from a set of parameters.
Value
Vector of size (ntaxa + Nnode) of the optimal values at the tips
of the tree.
pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.
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View source: R/shifts_manipulations.R
| compute_betas_from_shifts | R Documentation |
Computation of the optimal values at nodes and tips.
Description
compute_betas_from_shifts computes the optimal values at the nodes and tips of the
tree, given the value at the root and the list of shifts occurring in the tree.
It assumes an OU model.
Usage
compute_betas_from_shifts(phylo, optimal.value, shifts)
Arguments
phylo |
a phylogenetic tree, class |
optimal.value |
the optimal value at the root of the tree. |
shifts |
position and values of the shifts . |
Details
Note that this is intended to be an internal function, and should not be used.
In general, use node_optimal_values to get optimal values
from a set of parameters.
Value
Vector of size (ntaxa + Nnode) of the optimal values at the tips of the tree.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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