compute_dist_phy: Phylogenetic Distances
In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
View source: R/generic_functions.R
compute_dist_phy R Documentation
Phylogenetic Distances
Description
compute_dist_phy computes the phylogenetic distances d_ij between all the
tips i, j.
Usage
compute_dist_phy(phy)
Arguments
phy
a phylogenetic tree of class phylo.
Details
This function relies on ape function
dist.nodes.
Value
a matrix of phylogenetic distances, ordered as the tips of the
tree. The matrix is of type symmetricMatrix-class.
pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.
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View source: R/generic_functions.R
| compute_dist_phy | R Documentation |
Phylogenetic Distances
Description
compute_dist_phy computes the phylogenetic distances d_ij between all the
tips i, j.
Usage
compute_dist_phy(phy)
Arguments
phy |
a phylogenetic tree of class |
Details
This function relies on ape function
dist.nodes.
Value
a matrix of phylogenetic distances, ordered as the tips of the
tree. The matrix is of type symmetricMatrix-class.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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