compute_times_ca: Common Ancestors Times
In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
View source: R/generic_functions.R
compute_times_ca R Documentation
Common Ancestors Times
Description
compute_times_ca computes the times t_ij between the root and the common
ancestor of two tips i, j.
Usage
compute_times_ca(phy)
Arguments
phy
a phylogenetic tree of class phylo.
Details
This function relies on ape functions
node.depth.edgelength and mrca.
Value
a matrix of times of shared evolution, ordered as the tips of the
tree. The matrix is of type symmetricMatrix-class.
pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.
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View source: R/generic_functions.R
| compute_times_ca | R Documentation |
Common Ancestors Times
Description
compute_times_ca computes the times t_ij between the root and the common
ancestor of two tips i, j.
Usage
compute_times_ca(phy)
Arguments
phy |
a phylogenetic tree of class |
Details
This function relies on ape functions
node.depth.edgelength and mrca.
Value
a matrix of times of shared evolution, ordered as the tips of the
tree. The matrix is of type symmetricMatrix-class.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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