compute_residuals.simple | R Documentation |
compute_residuals.simple
computes the residuals after the fit of the
data in the simple case where the inverse of the variance matrix is given.
compute_residuals.simple(phylo, Y_data_vec, sim, Sigma_YY_chol_inv, miss)
phylo |
Input tree. |
Y_data_vec |
: vector indicating the data at the tips. |
sim |
(list) : result of function |
Sigma_YY_chol_inv |
: invert of the Cholesky variance-covariance matrix of the data. |
This function takes parameters sim and Sigma_YY_inv from
compute_mean_variance.simple
. It uses function extract_simulate_internal
to extract the needed quantities from these objects.
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