ccn_hmClass: Heatmap of the classification result
In pcahan1/cancerCellNet: CellNet, for cancer

ccn_hmClass

R Documentation

Heatmap of the classification result

Description

This function generates a heatmap of the classification result for visualization

Usage

ccn_hmClass(
  classMat,
  grps = NULL,
  isBig = FALSE,
  cRow = FALSE,
  cCol = FALSE,
  fontsize_row = 4,
  fontsize_col = 4,
  main = NA,
  scale = FALSE,
  customAnnoColor = NULL,
  ...
)

Arguments

`classMat`	classification matrix generated from `rf_classPredict`
`grps`	a vector that maps samples to a group
`isBig`	TRUE if this is a big heatmap
`cRow`	TRUE if rows should be clustered
`cCol`	TRUE if columns should be clustered
`fontsize_row`	the font size of the row
`fontsize_col`	the font size of the columns
`main`	the title of the heatmap
`scale`	FALSE if the highest value is 1 and the lowest is 0
`customAnnoColor`	a named vector with colors and named with group names