ccn_specGenesAll: finds general and context dependent specifc genes

In pcahan1/cancerCellNet: CellNet, for cancer

finds general and context dependent specifc genes

Description

finds general and context dependent specifc genes

Usage

ccn_specGenesAll(
  expDat,
  sampTab,
  holm = 1e-04,
  cval = 0.4,
  cvalGK = 0.75,
  dLevel,
  dLevelGK = NULL,
  prune = FALSE
)

Arguments

expDat	expression matrix
sampTab	sample table
holm	pvalue threshold for template matching
cval	template matching threshold for overall CT specific expression
cvalGK	template matching threshold for developmentally shared CT specific expression
dLevel	"description1",
dLevelGK	"description2"

Value

list of $matcher$cell_type->germ_layer$context$general$cell_type->gene vector etc

pcahan1/cancerCellNet documentation built on July 16, 2022, 12:12 a.m.