ccn_netScores: GRN status
In pcahan1/cancerCellNet: CellNet, for cancer

ccn_netScores

R Documentation

GRN status

Description

Calculates the status of all GRNs in query samples as compared to training data for

Usage

ccn_netScores(
  expDat,
  genes,
  tVals,
  ctt,
  classList = NULL,
  classWeight = TRUE,
  classWeightVal = 3,
  exprWeight = TRUE,
  exprWeightVal = 3,
  xmax = 1000
)

Arguments

`expDat`	query expression matrix
`tVals`	tvals
`classList`	classList
`classWeight`	class weight
`exprWeight`	expression weight
`subList`	of ct => genes
`minVals`	minVals