makeClassifier: Make Classifier

In pcahan1/cancerCellNet: CellNet, for cancer

Make Classifier

Description

Create a random forest classifier with the transformed training data from query_transform.

Usage

makeClassifier(
  expTrain,
  genes,
  groups,
  nRand = 50,
  ntrees = 2000,
  stratify = FALSE,
  sampsize = 40
)

Arguments

expTrain	transformed training data from query_transform
genes	vector of gene pairs from ptGetTop used as predictors
groups	named vector of cells to cancer categories
nRand	number of randomized profiles to make
ntrees	number of trees to build
stratify	whether to use stratified sampling or not
samplesize	the samplesize for straified sampling

Value

Random Forest Classifier object

pcahan1/cancerCellNet documentation built on July 16, 2022, 12:12 a.m.