API for pcahan1/singleCellNet
cell identity from single cell RNA-Seq data
| Global functions | |
|---|---|
| GEP_makeMean | Man page |
| addRandToSampTab | Source code |
| addToST | Source code |
| annSetUp | Source code |
| assess_comm | Source code |
| avgGeneCat | Man page Source code |
| cn_barplot_grnSing_base | Man page |
| cn_clPerf | Man page |
| cn_classAssess | Man page |
| cn_computeAUCPR | Man page |
| cn_correctZmat | Man page |
| cn_eval | Man page |
| cn_findSensAt | Man page |
| cn_rectArea | Man page |
| compareGenePairs | Man page Source code |
| csRenameOrth | Man page Source code |
| ctMerge | Source code |
| ctRename | Source code |
| downSampleW | Man page |
| dumbfunc | Source code |
| extractSCE | Man page Source code |
| extractSeurat | Man page Source code |
| findAvgLabel | Man page Source code |
| findBestPairs | Man page |
| findClassyGenes | Man page |
| getClassGenes | Man page Source code |
| getSpecGenes | Man page |
| getUniqueGenes | Source code |
| getVarFromList | Source code |
| gnrAll | Man page Source code |
| gnrBP | Man page Source code |
| harmonize | Man page Source code |
| hm_enr | Man page |
| hm_gpa_sel | Man page Source code |
| hm_sel_col | Source code |
| load10x | Man page |
| makeColList | Source code |
| makeGeneCompareTab | Man page Source code |
| makePairTab | Source code |
| makeSampleTable | Source code |
| mclust_Mat | Man page |
| mergeLoad10x | Man page |
| multiplot | Source code |
| myGrpSort | Source code |
| pair_transform | Man page |
| pcaPlot_recRes | Source code |
| pca_to_tsne | Man page |
| plotDBscan | Man page Source code |
| plotGPApca | Man page Source code |
| plotGeneComparison | Man page Source code |
| plot_PRs | Source code |
| plot_bundle | Source code |
| plot_class_PRs | Man page |
| plot_metrics | Source code |
| plot_multiAssess | Source code |
| plot_tsne | Source code |
| probTrans | Man page Source code |
| ptGetTop | Man page Source code |
| ptsne | Source code |
| query_transform | Man page |
| randomize | Man page Source code |
| removeRed | Source code |
| reorderCellsByGrp | Man page Source code |
| rf_classPredict | Man page Source code |
| sc_Accu | Man page |
| sc_classAssess | Man page |
| sc_classThreshold | Man page |
| sc_filterCells | Man page |
| sc_filterGenes | Man page |
| sc_findEnr | Man page |
| sc_hmClass | Man page Source code |
| sc_makeClassifier | Man page Source code |
| sc_testPattern | Source code |
| sc_testPatternTrans | Source code |
| sc_trans_rnaseq | Man page |
| scn_calibration | Source code |
| scn_extract_SN_DF | Man page |
| scn_make_tVals | Man page |
| scn_netScores | Man page |
| scn_normalizeScores | Man page |
| scn_predict | Man page Source code |
| scn_rawScore | Man page |
| scn_score | Man page |
| scn_train | Man page Source code |
| scn_trainGRN | Man page |
| selectTrain | Source code |
| skylineClass | Man page Source code |
| splitCommon | Source code |
| theme_black | Source code |
| theme_dviz_hgrid | Source code Source code |
| tsneMultsimp | Man page Source code |
| utils_loadObject | Man page |
| utils_myDate | Man page |
| utils_myDist | Man page |
| utils_strip_fname | Man page |
| utils_stripwhite | Man page |
| weighted_down | Man page |
