API for pengminshi/MRtree
Multi-resolution Reconciled Tree
| Global functions | |
|---|---|
| AMRI | Man page Source code |
| adjustedRandIndex | Man page Source code |
| assign_samples_to_paths | Man page Source code |
| augment_path | Man page Source code |
| clust_example | Man page |
| consensus_clustering | Man page Source code |
| consensus_clustering_weighted | Man page Source code |
| consensus_clustering_within_resolution | Man page Source code |
| construct_tree_from_labelmat | Man page Source code |
| cost | Man page Source code |
| create_sce_from_counts | Man page Source code |
| create_sce_from_normcounts | Man page Source code |
| data_example | Man page |
| decode | Man page Source code |
| diff_between_similarity_mat | Man page Source code |
| div_0 | Man page Source code |
| expected_MRI_perm | Man page Source code |
| exponential_sampling | Man page Source code |
| generateDataSymSim | Man page Source code |
| get_bad_nodeset | Man page Source code |
| get_index | Man page Source code |
| get_index_per_layer | Man page Source code |
| get_set_D_size | Man page Source code |
| get_similarity_from_labelmat | Man page Source code |
| get_similarity_from_tree | Man page Source code |
| getmode | Man page Source code |
| gg_color_hue | Man page Source code |
| grid_interpolant_next | Man page Source code |
| hamming.distance | Man page Source code |
| label_onehot | Man page Source code |
| label_to_membership | Man page Source code |
| linear_sampling | Man page Source code |
| modularity | Man page Source code |
| modularity_event_sampling | Man page Source code |
| mrtree | Man page Source code |
| mrtree.Seurat | Man page Source code |
| mrtree.SingleCellExperiment | Man page Source code |
| mrtree.data.frame | Man page Source code |
| mrtree.matrix | Man page Source code |
| path_dot_product | Man page Source code |
| plotContTable | Man page Source code |
| plot_clustree | Man page Source code |
| plot_tree | Man page |
| plot_umap | Man page Source code |
| prune_paths | Man page Source code |
| prune_tree | Man page Source code |
| random_tree | Man page Source code |
| rep_mat | Man page Source code |
| sc_clustering.HAC | Man page Source code |
| sc_clustering.sc3 | Man page Source code |
| sc_clustering.seurat | Man page Source code |
| sc_clustering.simlr | Man page Source code |
| sc_clustering.soup | Man page Source code |
| sc_clustering.umap_kmeans | Man page Source code |
| seurat_get_nn_graph | Man page Source code |
| stability_plot | Man page Source code |
| table_to_edgelist | Man page Source code |
| tree1 | Man page Source code |
| tree_to_labelmat | Man page Source code |
| tree_to_labelmat.hclust | Man page Source code |
| tree_to_labelmat.phylo | Man page Source code |
| unique_ind | Man page Source code |
| update_list | Source code |
