Files in pengminshi/MRtree

Multi-resolution Reconciled Tree

LICENSE.md R/data.R R/evaluation_functions.R R/mrtree.R R/plot_utils.R R/resolution.R R/sc_clustering_methods.R R/sc_simulation_functions.R README.md man/AMRI.Rd man/adjustedRandIndex.Rd man/assign_samples_to_paths.Rd man/augment_path.Rd man/clust_example.Rd man/consensus_clustering.Rd man/consensus_clustering_weighted.Rd man/consensus_clustering_within_resolution.Rd man/construct_tree_from_labelmat.Rd man/cost.Rd man/create_sce_from_counts.Rd man/create_sce_from_normcounts.Rd man/data_example.Rd man/decode.Rd man/diff_between_similarity_mat.Rd man/div_0.Rd man/expected_MRI_perm.Rd man/exponential_sampling.Rd man/generateDataSymSim.Rd man/get_bad_nodeset.Rd man/get_index.Rd man/get_index_per_layer.Rd man/get_set_D_size.Rd man/get_similarity_from_labelmat.Rd man/get_similarity_from_tree.Rd man/getmode.Rd man/gg_color_hue.Rd man/grid_interpolant_next.Rd man/hamming.distance.Rd man/label_onehot.Rd man/label_to_membership.Rd man/linear_sampling.Rd man/modularity.Rd man/modularity_event_sampling.Rd man/mrtree.Rd man/path_dot_product.Rd man/plotContTable.Rd man/plot_clustree.Rd man/plot_tree.Rd man/plot_umap.Rd man/prune_paths.Rd man/prune_tree.Rd man/random_tree.Rd man/rep_mat.Rd man/sc_clustering.HAC.Rd man/sc_clustering.sc3.Rd man/sc_clustering.seurat.Rd man/sc_clustering.simlr.Rd man/sc_clustering.soup.Rd man/sc_clustering.umap_kmeans.Rd man/seurat_get_nn_graph.Rd man/stability_plot.Rd man/table_to_edgelist.Rd man/tree1.Rd man/tree_to_labelmat.Rd man/tree_to_labelmat.hclust.Rd man/tree_to_labelmat.phylo.Rd man/unique_ind.Rd tests/testthat.R tests/testthat/test-mrtree.R tests/testthat/test-mrtree_sc3.R tests/testthat/test-mrtree_seurat.R tests/testthat/test-mrtree_soup.R tests/testthat/test-mrtree_umapkmeans.R tests/testthat/test-plot_utils.R tests/testthat/test-simulation.R vignettes/MRtree-tutorial.Rmd vignettes/zeisel_example.Rmd