Scoring_Job: A class that contains all the required information to run an...
In philliplab/EpitopeMatcher: Epitope Matcher
Description
Three pieces of information is required for a scoring job to be valid:
hla_genotype - The name of the hla_genotype to investigate
query_sequence_names - A character vector of the names of the query
sequences in which this hla_genotype must be looked for
hla_details - A list of further details about this hla_genotype
Details
The hla_details is forced to have the following values: "end_pos",
"epitope", "gene_name", "hla_genotype", "hxb2_dna_position", "organism",
"start_pos", "subprotein", and "sub_type". This is reasonable since the HLA
data will always come from the LANL file and these details must be added to
the results and error logs.
philliplab/EpitopeMatcher documentation built on Nov. 17, 2020, 3:28 p.m.
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Description
Three pieces of information is required for a scoring job to be valid:
hla_genotype - The name of the hla_genotype to investigate
query_sequence_names - A character vector of the names of the query sequences in which this hla_genotype must be looked for
hla_details - A list of further details about this hla_genotype
Details
The hla_details is forced to have the following values: "end_pos", "epitope", "gene_name", "hla_genotype", "hxb2_dna_position", "organism", "start_pos", "subprotein", and "sub_type". This is reasonable since the HLA data will always come from the LANL file and these details must be added to the results and error logs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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