This function is mostly just a wrapper for score_epitope
.
1 2 3 4 5 6 7 | score_all_epitopes(
the_scoring_jobs,
query_alignment,
range_expansion,
update_progress_bar = NULL,
substitutionMatrix = "BLOSUM50"
)
|
the_scoring_jobs |
A list of scoring_jobs |
query_alignment |
The query alignment |
range_expansion |
After the epitope is found in the reference seqeuence, search in each of the query sequences for the same epitope, but expand the range with this number of amino acids |
update_progress_bar |
A closure passed in from a reactive shiny expression that allows a progress bar to be updated when using the shiny web ui. |
substitutionMatrix |
substitution matrix representing the fixed substitution scores for an alignment. It cannot be used in conjunction with patternQuality and subjectQuality arguments. |
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