get_patient_ids-methods: Returns the ids of the patients in the data structure
In philliplab/EpitopeMatcher: Epitope Matcher
Description
It parses the FASTA header when called on a XStringSet object using the sep
and id_position arguments.
Usage
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get_patient_ids(x, sep = "\\|", id_position = 1)
## S4 method for signature 'Patient_HLA'
get_patient_ids(x)
## S4 method for signature 'AAStringSet'
get_patient_ids(x, sep = "\\|", id_position = 1)
Arguments
x
The data structure to interrogate
sep
The symbol used to separate elements in the sequence names
id_position
After the sequence name has been split on the 'sep'
character, which element of the resulting vector contains the patient id?
philliplab/EpitopeMatcher documentation built on Nov. 17, 2020, 3:28 p.m.
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Description
It parses the FASTA header when called on a XStringSet object using the sep and id_position arguments.
Usage
1 2 3 4 5 6 7 | get_patient_ids(x, sep = "\\|", id_position = 1)
## S4 method for signature 'Patient_HLA'
get_patient_ids(x)
## S4 method for signature 'AAStringSet'
get_patient_ids(x, sep = "\\|", id_position = 1)
|
Arguments
x |
The data structure to interrogate |
sep |
The symbol used to separate elements in the sequence names |
id_position |
After the sequence name has been split on the 'sep' character, which element of the resulting vector contains the patient id? |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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