find_epitope_in_ref: Finds the position of the epitope in the reference sequence
In philliplab/EpitopeMatcher: Epitope Matcher
Description
Usage
Arguments
Details
Description
It uses pairwiseAlignment with the default settings. See Biostrings manual.
Usage
1
find_epitope_in_ref(epitope, query_alignment, alignment_type = "overlap")
Arguments
epitope
The epitope to find in the sequence. Either a character
string or an AAString
query_alignment
The query alignment
alignment_type
The type of alignment to try. Defaults to 'overlap'
use 'global' if 'overlap' alignment cannot be found. See Biostrings manual.
Details
Lots of things to test and investigate that can potentially improve this
function.
philliplab/EpitopeMatcher documentation built on Nov. 17, 2020, 3:28 p.m.
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Description Usage Arguments Details
Description
It uses pairwiseAlignment with the default settings. See Biostrings manual.
Usage
1 | find_epitope_in_ref(epitope, query_alignment, alignment_type = "overlap")
|
Arguments
epitope |
The epitope to find in the sequence. Either a character string or an AAString |
query_alignment |
The query alignment |
alignment_type |
The type of alignment to try. Defaults to 'overlap' use 'global' if 'overlap' alignment cannot be found. See Biostrings manual. |
Details
Lots of things to test and investigate that can potentially improve this function.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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