Files in philliplab/EpitopeMatcher
Epitope Matcher
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/data_documentation.R
R/lanl_hla_data.R
R/list_jobs.R
R/matcher.R
R/misc.R
R/msa.R
R/patient_HLA.R
R/scoring_job.R
R/shiny_app.R
README.md
container/Containerfile
data/BETWEEN10.rda
data/BETWEEN38.rda
data/WITHIN5.rda
etm
inst/EpitopeMatcher_manual.pdf
inst/sample_script.R
inst/test_data/EpitopeMatcher_test_data.zip
inst/test_data/lanl_hla_test_file.csv
inst/test_data/patient_hla_test_file.csv
inst/test_data/query_alignment_test_file.fasta
inst/tests/test-data.r
inst/tests/test-lanl_hla.R
inst/tests/test-list_jobs.R
inst/tests/test-matcher.R
inst/tests/test-msa.R
inst/tests/test-patient_HLA.R
inst/tests/test-scoring_jobs.R
inst/www/server.R
inst/www/ui.R
inst/www/www/no_wrap_tables.css
man/BETWEEN10.Rd
man/BETWEEN38.Rd
man/LANL_HLA_data.Rd
man/Patient_HLA.Rd
man/Scoring_Job.Rd
man/WITHIN5.Rd
man/build_scoring_jobs.Rd
man/dot-sequence_comparison_stats.Rd
man/epitope_found.Rd
man/find_epitope_in_ref.Rd
man/flatten_lanl_hla.Rd
man/get_epitope-methods.Rd
man/get_hla_details-methods.Rd
man/get_hla_genotype-methods.Rd
man/get_patient_ids-methods.Rd
man/get_set_of_test_data.Rd
man/get_test_lanl_hla_data.Rd
man/get_test_patient_hla_data.Rd
man/get_test_query_alignment.Rd
man/list_scores_to_compute.Rd
man/match_epitopes.Rd
man/match_patient_hla_to_query_alignment.Rd
man/read_lanl_hla.Rd
man/read_patient_hla.Rd
man/read_query_alignment.Rd
man/run_EpitopeMatcher_app.Rd
man/score_all_epitopes.Rd
man/score_epitope.Rd
push_test
tests/test-all.R
