match_patient_hla_to_query_alignment: Matches the patient_hla data to the query sequence to check...
In philliplab/EpitopeMatcher: Epitope Matcher
Description
Usage
Arguments
Value
Description
It treats the patient_id column in the patient_hla data as a regular
expression and performs the lookup to the query sequence names.
Usage
1
match_patient_hla_to_query_alignment(query_alignment, patient_hla)
Arguments
query_alignment
An AAStringSet that contains the multiple sequence
alignment of the patient's viral sequences
patient_hla
The data.frame that specifies which query sequence to
check against which hla genotypes
Value
A list of lists. The inner lists contains the elements
'hla_genotype' and 'query_sequence_names'
philliplab/EpitopeMatcher documentation built on Nov. 17, 2020, 3:28 p.m.
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Description Usage Arguments Value
Description
It treats the patient_id column in the patient_hla data as a regular expression and performs the lookup to the query sequence names.
Usage
1 | match_patient_hla_to_query_alignment(query_alignment, patient_hla)
|
Arguments
query_alignment |
An AAStringSet that contains the multiple sequence alignment of the patient's viral sequences |
patient_hla |
The data.frame that specifies which query sequence to check against which hla genotypes |
Value
A list of lists. The inner lists contains the elements 'hla_genotype' and 'query_sequence_names'
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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