flatten_lanl_hla: Flattens the LANL HLA file
In philliplab/EpitopeMatcher: Epitope Matcher
Description
Usage
Arguments
Details
Description
Sometimes the same hla has a number of different names. Hence the
hla_genotype column in the lanl file must be processed before the matches
can be made.
Usage
1
flatten_lanl_hla(lanl_hla)
Arguments
lanl_hla
The data.frame (of class LANL_HLA_data) that contains
the descriptions of the different HLA genotypes
Details
This function takes the LANL HLA file and transforms it so that each row
correspond to one and only one hla. This means that row in which the
'hla_genotype' column is unpopulated gets discarded and that rows in which
the 'hla_genotype' column contains the names of more than one hla_genotype
(assumed to be seperated by commas) will be duplicated and each duplicate
will be assigned to one hla_genotype.
philliplab/EpitopeMatcher documentation built on Nov. 17, 2020, 3:28 p.m.
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Description Usage Arguments Details
Description
Sometimes the same hla has a number of different names. Hence the hla_genotype column in the lanl file must be processed before the matches can be made.
Usage
1 | flatten_lanl_hla(lanl_hla)
|
Arguments
lanl_hla |
The data.frame (of class LANL_HLA_data) that contains the descriptions of the different HLA genotypes |
Details
This function takes the LANL HLA file and transforms it so that each row correspond to one and only one hla. This means that row in which the 'hla_genotype' column is unpopulated gets discarded and that rows in which the 'hla_genotype' column contains the names of more than one hla_genotype (assumed to be seperated by commas) will be duplicated and each duplicate will be assigned to one hla_genotype.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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