Files in plger/iPSCpoweR
iPSCpoweR: transcriptomics-based evaluation of experimental designs for iPSC disease modeling
.directory
DESCRIPTION
LICENSE
NAMESPACE
R/DEA.permutations.R
R/getFunctions.R
R/sensMatrixPlots.R
R/varianceExplained.R
R/wrappers.R
README.md
data/GSE79636.rda
data/cellpheno.rda
data/hipsci_annotation.rda
data/hipsci_txCounts.rda
data/probSpurious.rda
data/tx2gene.rda
data/txLengths.rda
man/.Rhistory
man/DEA.permutateClones.Rd
man/DEA.permutateIndividuals.Rd
man/TMM.Rd
man/aggByClone.Rd
man/auc.Rd
man/cellpheno.permutateIndividuals.Rd
man/cellphenoVarianceExplained.Rd
man/combinePermResults.Rd
man/dreamWrapper.Rd
man/edgeRwrapper.Rd
man/fpkm.Rd
man/fpkm2tpm.Rd
man/getAOVresiduals.Rd
man/getGeneExpr.Rd
man/getLmeResiduals.Rd
man/getPermROC.Rd
man/getRecurrentGenes.Rd
man/getSamplesInfo.Rd
man/getSensitivityMatrices.Rd
man/getSensitivityMatrix.Rd
man/getSpuriousFCs.Rd
man/getTxExpr.Rd
man/glmmWrapper.Rd
man/initPar.Rd
man/multiProbSpurious.Rd
man/plotPrecisionScatter.Rd
man/probSpurious.Rd
man/readPermResults.Rd
man/transcriptionalVarianceExplained.Rd
man/voomLmerWrapper.Rd
man/voomWrapper.Rd
man/voomWrapperSumReps.Rd
man/vstLmerWrapper.Rd
results/HipSci/analyses_files/figure-html/unnamed-chunk-10-1.png
results/HipSci/analyses_files/figure-html/unnamed-chunk-6-1.png
results/HipSci/analyses_files/figure-html/unnamed-chunk-7-1.png
results/HipSci/analyses_files/figure-html/unnamed-chunk-9-1.png
results/HipSci/hipsci_results.md
vignettes/ROC.png
vignettes/iPSCpoweR.Rmd
vignettes/permu_schemes.png
vignettes/sensMat.png
